Also to get your tune close make sure the Air Bypass screws are seated. These are small screws next to the Idle mixture screws which have jam nuts on them.
You want to set all Idle mixture screws to 1 full turn out from seated as a starter. And the Idle speed screws a half turn in after they just touch the butterfly lever. Fire it up and let it warm up. Now go to each Idle mixture screw and turn them in 1/4 turn until the engine starts to run rough. At this point start to turn them out 1/4 turn until you find the highest RPM. Keep doing this until you reach a point where turning the mixture screws out does not cause RPM's to increase. Now turn them back in 1/8 turn at a time until you reach that highest RPM.
Now you use the syncronizing tool. There are a couple different styles. Fo these carbs, I like to use the one that sort of looks like a snail shell:
http://www.pacificcustoms.com/AC000124.html.
You use this to sync both carbs to get the smoothest idle. You do not need to make very drastic adjustments here. The speed screws should not be turned in more than a 1/2 turn.
Once this is done, attach the linkage and check everything as the rest here have said. I have seen some cross bars push on one carb before the other, so I've had to basically add a little "preload" to the slower moving side to they throttle pull is even.
If you have to turn the Idle mixture screws out more than a turn and a half to get it to idle properly, go up a size on the Idle jet. If less than a half turn out, then go down a size.
And as virginsand said, make sure all your jets are clear of any junk. And definitely check the float level. If you do pull the carb top off ot check the float level and these carbs are used, check the fuel bowl to make sure you don't have any sand or junk there. If you find anything, clean it out.